Search for: All records

Abstract Recurrent novae undergo thermonuclear-powered eruptions separated by less than 100 yr, enabled by subgiant or red giant donors transferring hydrogen-rich matter at very high rates onto their massive white dwarf companions. The most rapidly moving parts of envelopes ejected in successive recurrent nova events are predicted to overtake and collide with the slowest ejecta of the previous eruption, leading to the buildup of vast (∼10–100 pc) superremnants surrounding all recurrent novae, but only three examples are currently known. We report deep narrowband imaging and spectroscopy, which have revealed a ∼70 pc diameter shell surrounding the frequently recurring nova RS Ophiuchi. We estimate the superremnant mass to be ∼20–200M_⊙, expanding at a few tens of km/s, with an age of order 50–100 kyr. Its extremely low surface brightness and large angular size help explain the hitherto surprising absence of nova superremnants. Our results support the prediction that all recurrent novae are surrounded by similar extended structures. 

Abstract We used the Condor Array Telescope to obtain deep imaging observations through luminance broadband and Heii, [Oiii], Hei, Hα, [Nii], and [Sii] narrowband filters of an extended region of the M81 Group spanning ≈8 × 8 deg²on the sky centered near M81 and M82. Here, we report aspects of these observations that are specifically related to (1) a remarkable filament known as the “Ursa Major Arc” that stretches ≈30° across the sky roughly in the direction of Ursa Major, (2) a “giant shell of ionized gas” that stretches ≈0.8 deg across the sky located ≈0.6 deg northwest of M82, and (3) a remarkable network of ionized gaseous filaments revealed by the new Condor observations that appear to connect the arc, the shell, and various galaxies of the M81 Group and, by extension, the group itself. We measure flux ratios between the various ions to help to distinguish photoionized from shock-ionized gas, and we find that the flux ratios of the arc and shell are not indicative of shock ionization. This provides strong evidence against a previous interpretation of the arc as an interstellar shock produced by an unrecognized supernova. We suggest that all of these objects, including the arc, are associated with the M81 Group and are located at roughly the distance (≈3.6 Mpc) of M81, that the arc is an intergalactic filament, and that the objects are associated with the low-redshift cosmic web. 

Abstract Research in Arabidopsis thaliana has a powerful influence on our understanding of gene functions and pathways. However, not everything translates from Arabidopsis to crops and other plants. Here, a group of experts consider instances where translation has been lost and why such translation is not possible or is challenging. First, despite great efforts, floral dip transformation has not succeeded in other species outside Brassicaceae. Second, due to gene duplications and losses throughout evolution, it can be complex to establish which genes are orthologs of Arabidopsis genes. Third, during evolution Arabidopsis has lost arbuscular mycorrhizal symbiosis. Fourth, other plants have evolved specialized cell types that are not present in Arabidopsis. Fifth, similarly, C4 photosynthesis cannot be studied in Arabidopsis, which is a C3 plant. Sixth, many other plant species have larger genomes, which has given rise to innovations in transcriptional regulation that are not present in Arabidopsis. Seventh, phenotypes such as acclimation to water stress can be challenging to translate due to different measurement strategies. And eighth, while the circadian oscillator is conserved, there are important nuances in the roles of circadian regulators in crop plants. A key theme emerging across these vignettes is that even when translation is lost, insights can still be gained through comparison with Arabidopsis. 

This article is a Commentary onAcoca‐Pidolleet al. (2024),242: 717–726. 

Gene expression can be influenced by genetic variants that are closely linked to the expressed gene (cis eQTLs) and variants in other parts of the genome (trans eQTLs). We created a multiparental mapping population by sampling genotypes from a single natural population ofMimulus guttatusand scored gene expression in the leaves of 1,588 plants. We find that nearly every measured gene exhibits cis regulatory variation (91% have FDR < 0.05). cis eQTLs are usually allelic series with three or more functionally distinct alleles. The cis locus explains about two thirds of the standing genetic variance (on average) but varies among genes and tends to be greatest when there is high indel variation in the upstream regulatory region and high nucleotide diversity in the coding sequence. Despite mapping over 10,000 trans eQTL / affected gene pairs, most of the genetic variance generated by trans acting loci remains unexplained. This implies a large reservoir of trans acting genes with subtle or diffuse effects. Mapped trans eQTLs show lower allelic diversity but much higher genetic dominance than cis eQTLs. Several analyses also indicate that trans eQTLs make a substantial contribution to the genetic correlations in expression among different genes. They may thus be essential determinants of “gene expression modules,” which has important implications for the evolution of gene expression and how it is studied by geneticists. 

Abstract Hailstorms cause billions of dollars in damage across the United States each year. Part of this cost could be reduced by increasing warning lead times. To contribute to this effort, we developed a nowcasting machine learning model that uses a 3D U-Net to produce gridded severe hail nowcasts for up to 40 min in advance. The three U-Net dimensions uniquely incorporate one temporal and two spatial dimensions. Our predictors consist of a combination of output from the National Severe Storms Laboratory Warn-on-Forecast System (WoFS) numerical weather prediction ensemble and remote sensing observations from Vaisala’s National Lightning Detection Network (NLDN). Ground truth for prediction was derived from the maximum expected size of hail calculated from the gridded NEXRAD WSR-88D radar (GridRad) dataset. Our U-Net was evaluated by comparing its test set performance against rigorous hail nowcasting baselines. These baselines included WoFS ensemble Hail and Cloud Growth Model (HAILCAST) and a logistic regression model trained on WoFS 2–5-km updraft helicity. The 3D U-Net outperformed both these baselines for all forecast period time steps. Its predictions yielded a neighborhood maximum critical success index (max CSI) of ∼0.48 and ∼0.30 at forecast minutes 20 and 40, respectively. These max CSIs exceeded the ensemble HAILCAST max CSIs by as much as ∼0.35. The NLDN observations were found to increase the U-Net performance by more than a factor of 4 at some time steps. This system has shown success when nowcasting hail during complex severe weather events, and if used in an operational environment, may prove valuable. 

Abstract Ancient whole-genome duplications (WGDs) are believed to facilitate novelty and adaptation by providing the raw fuel for new genes. However, it is unclear how recent WGDs may contribute to evolvability within recent polyploids. Hybridization accompanying some WGDs may combine divergent gene content among diploid species. Some theory and evidence suggest that polyploids have a greater accumulation and tolerance of gene presence-absence and genomic structural variation, but it is unclear to what extent either is true. To test how recent polyploidy may influence pangenomic variation, we sequenced, assembled, and annotated twelve complete, chromosome-scale genomes of Camelina sativa, an allohexaploid biofuel crop with three distinct subgenomes. Using pangenomic comparative analyses, we characterized gene presence-absence and genomic structural variation both within and between the subgenomes. We found over 75% of ortholog gene clusters are core in Camelina sativa and <10% of sequence space was affected by genomic structural rearrangements. In contrast, 19% of gene clusters were unique to one subgenome, and the majority of these were Camelina-specific (no ortholog in Arabidopsis). We identified an inversion that may contribute to vernalization requirements in winter-type Camelina, and an enrichment of Camelina-specific genes with enzymatic processes related to seed oil quality and Camelina’s unique glucosinolate profile. Genes related to these traits exhibited little presence-absence variation. Our results reveal minimal pangenomic variation in this species, and instead show how hybridization accompanied by WGD may benefit polyploids by merging diverged gene content of different species.